Scaffold Ga0049083_10001731

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10001731
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8260
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F003965	Metagenome / Metatranscriptome	459	Y
F013527	Metagenome / Metatranscriptome	270	Y
F021109	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_1000173116	F013527	N/A	LGLSIQGSQVMKNFEFLTYITVEAESYDEAIDVFQFQLKYGINKDNVYVADIKDLELSE*
Ga0049083_1000173119	F003965	AGGTGG	MTTITKCLEHIPNLAISEYCDEQFTFCEICEQNIERWYNDTDPERLPMWSEWKVSN*
Ga0049083_1000173120	F021109	N/A	LLYLQYTKKKGVQMNTLKRIQAEQTIARHEAHEKAMAKSPWIRETIQAYRNATPEQIAKAQELLKKRGLI*
Ga0049083_100017315	F002515	N/A	MKKTPEELRRLMELRRSNAASAVPSKKNYSRKKECQSLMIELKKESEQPTT*