Scaffold Ga0049083_10001288

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10001288
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9395
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041487	Metagenome / Metatranscriptome	160	Y
F062766	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_100012882	F041487	N/A	METKEKTIYGTFLQDRIVTIKPVESSGKWSTLLVAGQDRKKDPFMYNKTKRSYQVPLNSEIKGGGVKVILDDQHRVKIQKYMESFPNGMTQKEFFEKELGIDLNPTLQTEKNFWRSDRRGRVILTKEGTTLNLNQSLDMLKYLILLANRLLISPSYEDRELKATYEFMVVDESKVTSQKLVEANIKAQAFVKFAEVTNSTKAIIGFIKSLGRTIPLSATEDWLKGEVLNVIDNNPKYFLEIVNHPQYNDRIFVQESIEAGAIIRKSEKRYVLDNGIELGDLTDTINYINDPENQEVKLRIKAKIELTKRK*
Ga0049083_100012883	F062766	N/A	MTANQMADLLEEKLDRVTSFGSPGYEDFDLSSVLSEAQQLYVKKFFDQVNNRKQKGFQEIEIRNQGLAALIKNGNALTPSASQTGVIVNNNVVGKFFDLPSDHMYTIYEECVIDKKECGTDRFIVGYIVPTAHNEMQRFNWSKYKRPFYKENGDCRVWRSEYERFVSGINPANPATGKRHELFTDGTFNITNYYMRYLKNPENIIVDRNITTNQRNCELDISTHVVVVDIATDLMMQRTKDQKVPIIEGFKDLE*