Scaffold Ga0049083_10000095

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10000095
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24303
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (62.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F004476	Metagenome / Metatranscriptome	436	Y
F009266	Metagenome / Metatranscriptome	320	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_100000951	F004476	AGAAG	MLFSKHGFKSVDTTEEFVKQAIEFGQKDIVLSMVHENGVIDIVISPTMDAIEADVYHFLNDDTELKYSMPIKTLTDNNISSLALTSAIHAYLSEAFKVAEMF
Ga0049083_100000952	F003750	GGAG	MTEEIINRTMQVFLYTGGIIAFWQITKYMPKALYTTLECISVIASTVLCITPIAMIIEYILGGNIHTTMMFTGCLAGLGLLCGIWMVMVQSSRELQGKKQYKYVVL*
Ga0049083_1000009539	F009266	AGAAG	MTDKERKILDKEIQYLCEQQDRVKAIREYTGINPGYTFLREVETIESLYKSVLDSRKYDKSTYFSAATSGWHVVYLRDKKTYKKDEEFRIKIFHTFVWSDNLE*