Scaffold Ga0049083_10000006

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10000006
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46108
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (72.88%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002489	Metagenome / Metatranscriptome	554	Y
F003408	Metagenome / Metatranscriptome	488	Y
F004840	Metagenome / Metatranscriptome	421	Y
F008357	Metagenome / Metatranscriptome	334	Y
F030758	Metagenome / Metatranscriptome	184	Y
F037095	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_100000062	F003408	AGAAG	MPELIQTLQSMNKREEKERKFLAGLQGVNLDSTEEKEGPSFEDIRRRALGITASGDDVVSLQGAIATETGFGINAGLGYEVG*
Ga0049083_1000000625	F030758	GGA	MATVDKNFRVKNGLNVAGPATFSSNVVLGTTPLRFDTVTNKLQLELNGTWVPIAFNSEIPDTTQAISFMDIGLAIDYDGQPTYIIQANGVTPSGSSKYADGGSPTSTSWDMYFDSGEI*
Ga0049083_1000000631	F008357	AGGAG	MAVSKNFEVDQNATFIFEVQYTLEDEVTPIDITGASAKMQVRDTQGGSKLAFTLTSPSGGITINGPQGKLSVKMTPTQTNKLFYPKSSYDIMIIDSNGNKIKLLEGFMTLSRSVTI*
Ga0049083_1000000632	F037095	GGAG	MAKFNKSDLNKDGKIQMTEQILAALGTYARAFLSAAIALYMTGNTSPRDLLMGGFAAVAPVILKALSPSNKDFGFTNEAK*
Ga0049083_1000000637	F002489	AGGCGG	MDSKDEQSIEDNLPMVNYIMLHRIYDMLTVIANKLVGGDEINKMVEYHEAGYLLGPAPSYNAGLDEKE*
Ga0049083_100000065	F000258	GGAGG	MTANYKIDAMTELRKFLWNQLKEYSIFDPEEYYSDNLGKEIIPILPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWAVCCEQILFTIYSVDVTDINEIRNFMTDEFRRMDDSAKDVRLSGLVSDKIKFFSIYVADISPTSPSEELQGFLSADVVLEIKYSRILDNSGRFI*
Ga0049083_1000000654	F001562	AGGAG	MTQFERDLTIKESFIDLLNEIYPEVKIGYSTFTPAEILECCDPIAFSIGVIEHEDYMLERGELDDEEM*
Ga0049083_1000000658	F004840	AGGAG	MYKITCAYDSEPIHYIREYENEFGAWENFFLFTDWGFADEYSTVNLYTPTGKCHTKVFYREGRRVVVK*