Scaffold Ga0049083_10000004

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10000004
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51611
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (31.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F038565	Metagenome / Metatranscriptome	165	Y
F043788	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_1000000415	F043788	GAG	MGSLDNVYDMLQKLEDSNMEYLLITVQKGKKQGKADVFFNLKDRTSMKILATGLAAFKKEINEIERKEKEDEE*
Ga0049083_1000000422	F038565	N/A	VTNKKKFNFPDSVLKQIDECSFGGYVLFNFSNKGSPQVYTKFDNQINAMALLYYLNTWSQSVDQLNLEATTDLIARKNDEEDRENED*
Ga0049083_1000000440	F017268	N/A	VNLDITIIFNLVLGALSFLGGWLFTRVFSLFDKQENLMKDINDKTFSDFITLRKELELEARKHQQEIADLALKVSTTYMTKESFESYFDRIEDKLDKNFEMIQNHFLKK*