Basic Information | |
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Taxon OID | 3300005575 Open in IMG/M |
Scaffold ID | Ga0066702_10002305 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6694 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F022042 | Metagenome / Metatranscriptome | 216 | Y |
F025536 | Metagenome / Metatranscriptome | 201 | Y |
F042486 | Metagenome / Metatranscriptome | 158 | Y |
F053482 | Metagenome / Metatranscriptome | 141 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066702_100023054 | F053482 | GAGG | VELLVTIAIGMTMAGVTFMALMPLFKQNHVDAAYDTTLSVIRNYRNQSISQSKRYILTFTSPGTITVQYWGVGLPVSPPPVTVATYTLPPDIQFAVQAGFPAAAPDSFGTGGTAIDFDQGMGLGSQNYIMFMPDGSSQDTLGNYNSGVLYLTLPGDLYSSRAVSVFGTTGRVRGWRLYNQGGNQWVQQ* |
Ga0066702_100023055 | F025536 | GGA | MRLADPAATLAYLSLFFGLLLVLFPVSFPRIIIANWQSARLTPLMILFTVSVNLGLYLAVAHQRSAKPGILAAACLGSLPVFLLAALNFVLQATIAHTFAGSSPNASLLVDEEILAHTYFAMIAAIFFPFLMIRLAQQFQS* |
Ga0066702_100023056 | F042486 | N/A | MPALHIYELTTGWAAAKWLLWILLYLSLGILVPWVLARAWTHQHQVTMQLRLKQLFQSGELGLVGLMLAISVIWDLQKSQYSSYTIALGSVFLALTGVMAGSVWIEAYCRRSSGIRFTPGRAWRDSRNLAFLVFSLAAVTEILLDRFAKVIAL* |
Ga0066702_100023057 | F022042 | GGGGG | MTLSALLVCVDEAPAQVLRRVLEELSIQVEACPDFVRAGIRLAQERFDVVIVDGSTNAQVVSLLRDSRQSRVNEGTLAI |
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