NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066694_10475919

Scaffold Ga0066694_10475919


Overview

Basic Information
Taxon OID3300005574 Open in IMG/M
Scaffold IDGa0066694_10475919 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)583
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024829Metagenome / Metatranscriptome204Y
F040173Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0066694_104759191F024829GAGVPLSSLDRRGIVILGGIGAFAVVLLATVVGVTWTRPIIGPDNCVYRDKRFLGRATTDQTVILVDQSEALTETHRRFALNFVKDYVADDSKFA
Ga0066694_104759192F040173N/ARYRQTNARVRVSPAPYYFGNSFTFEGHLVRPPDAISEDEERLSRSYESAMKDFSEIARQNDATVQNLRTAEIRRRDYHFNKLERDVRERLIREAWEIKS*

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