Scaffold Ga0078972_1010347

Overview

Basic Information

• Taxon OID: 3300005573
• Scaffold ID: Ga0078972_1010347
• Source Dataset Name: Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17498
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.611006
  • Long. (^o): -110.440182

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052337	Metagenome	142	Y
F069605	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078972_10103472	F052337	GAGG	MSGMDQIWGQTRGLDDRTLDQVDLSKRRSGSRDRVRHPDMGTDTMSGIPIRNVQRPTLNSQLSMG*
Ga0078972_101034725	F069605	AGCAGG	MEFGDGGLLLCNVVDRVGSVVIGDKSGVSVALNGAGDALLDQI*