Scaffold Ga0078972

Basic Information
Taxon OID	3300005573 Open in IMG/M
Scaffold ID	Ga0078972_1003846 Open in IMG/M
Source Dataset Name	Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43519
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

43519

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (71.43%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.611006	Long. (^o)	-110.440182	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.611006

Long. (^o)

-110.440182

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013170	Metagenome	273	Y
F038537	Metagenome	165	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0078972_100384617	F013170	N/A	MSVHLHTTITRKTNEALEELAKTYGTKSRVLEKAVETLLRVDKVGSCDDCVIKARMSEQTNLREALDLTSIGRKTLDSLLDVAVGDKTIESLLKEQKAEAKNIIEILKGSVAWKTPSNFKEFISVLEEIKNLTRMFDIPSYSEIDSVAILRPKAFKRLPEIVAFQIATILEGIGVPFDLRMMGEDIVVKMIRSEVYPLRRKEFIEFLDQQIEKRLSNVTPGLFKNNLMLVGPAFMSWAEKHLEEPVTDLGSFIEDVRIALGADELPKEPKDFVKGLLSACVKMNWFRQAKVLAEKEENTLELVFQVTAIPVTRISVAAFSVMLATRGWKLVNYSIEHTTVNMTVKYVGAEDQSLLDQLAELSLFQTIGKQFLDVVPVPRELFNSFASKVYETDRQKFDEIYRATGVRIANAIRMLARNDPEKIRRLSQNFILKSINATQPDAEVRFVDEEHFTMIFKRVEPLIMNSQRMLIESMFRELGYDISTTVFQNLLSFKLKLLEKPVLEPVPRKRIMQTLVDEMTSCKTVEEAFALEKEQLDEMFPEDYPWTIREVGDRLIDMYRELGIEVEIEYFEGGFTLKYKTCPYYKLVKNQQKTWLCTVRKKTLDYVISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEKEEKTH*
Ga0078972_100384645	F038537	AGGAG	MHRTVYFWRGLYPLLRRFCREKNVSFNRVVNCAIEAFLGEADVEELRLTAKLEQLLREEAGLRRVSNAMLRSGSYLPGYVQRVLKEPGRPLSHLPNPQRPLKALNPKEERVFRRIATRREQIAQEIAEIQEQLLRDVKPFRLKPELRRSSWSRARAKTTLEGGEKQDAC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0078972_1003846

Overview

Ecosystem & Geography

Associated Families

Sequences