Scaffold Ga0068885_1066604

Overview

Basic Information

• Taxon OID: 3300005565
• Scaffold ID: Ga0068885_1066604
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel7S_1600h metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1102
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015440	Metagenome / Metatranscriptome	254	N
F017436	Metagenome / Metatranscriptome	240	N
F017786	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068885_10666041	F017786	AGG	MNREEMKSLSAKQILIAKERLEHGEYVLLVNEFWIPPITLQRALEIVKNLREKLELRQLELQ
Ga0068885_10666042	F015440	N/A	MEGIRESERNFQLFKAGLSMVSCLTGEAIRVLESNLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKERICEKEAKIAEALTLPLIKNLRQLRDLCNKGKSEQTLLELNTFKFHIDYLSNMRHEQWTQDMLKTHIFIVIQQEMDNILNVLNPKITEPLDKNQESTIRQEWTKVLSL*
Ga0068885_10666043	F017436	N/A	MFRETVITVQRLSVSAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIATLSRNSDRYRFKRIQLALYILLSEALSIEGSNERYKGLKDMYYFMDRLKTTTFDEWKNFLITGSTEFFDNRF*