Basic Information | |
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Taxon OID | 3300005565 Open in IMG/M |
Scaffold ID | Ga0068885_1066604 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel7S_1600h metaT (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1102 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio, Lake Erie | |||||||
Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015440 | Metagenome / Metatranscriptome | 254 | N |
F017436 | Metagenome / Metatranscriptome | 240 | N |
F017786 | Metagenome / Metatranscriptome | 238 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068885_10666041 | F017786 | AGG | MNREEMKSLSAKQILIAKERLEHGEYVLLVNEFWIPPITLQRALEIVKNLREKLELRQLELQ |
Ga0068885_10666042 | F015440 | N/A | MEGIRESERNFQLFKAGLSMVSCLTGEAIRVLESNLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKERICEKEAKIAEALTLPLIKNLRQLRDLCNKGKSEQTLLELNTFKFHIDYLSNMRHEQWTQDMLKTHIFIVIQQEMDNILNVLNPKITEPLDKNQESTIRQEWTKVLSL* |
Ga0068885_10666043 | F017436 | N/A | MFRETVITVQRLSVSAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIATLSRNSDRYRFKRIQLALYILLSEALSIEGSNERYKGLKDMYYFMDRLKTTTFDEWKNFLITGSTEFFDNRF* |
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