Scaffold Ga0070664_100468043

Overview

Basic Information

• Taxon OID: 3300005564
• Scaffold ID: Ga0070664_100468043
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1159
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005008	Metagenome / Metatranscriptome	415	Y
F019514	Metagenome / Metatranscriptome	229	Y
F055231	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070664_1004680431	F055231	N/A	LGVLAATPAFANWWIVRSSDETCLVVDIEPTGKEKGITKIGKDSYPTAEQAEADVKRLCKTEVKPKRNP*
Ga0070664_1004680432	F005008	GGAG	MTTSKRQSYNKTRRVGSEPNLGQKAAEREKKSKAQLSHMEGRRPSSARGRFVAWCKQEQASIQQQLELMQSGKVLTGENRGSGWIDTTGESVKRAKARLAELESLLTEKGSATISKP*
Ga0070664_1004680433	F019514	GGA	MATWSLAGRHAGPDKHPTPVFINLDNVLTIERQNDLTMVTMVGGEQVYIDTMPETLIGTVAPPGPV*