Scaffold Ga0068855_100510375

Overview

Basic Information

• Taxon OID: 3300005563
• Scaffold ID: Ga0068855_100510375
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1305
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002850	Metagenome / Metatranscriptome	526	Y
F044737	Metagenome / Metatranscriptome	154	Y
F061180	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068855_1005103751	F044737	N/A	TRAAGSDILTDSRMVVTWTDGAKGLNAWRGAIITPDGRTVLGIEELESLKRNGPIREQLVTWSAATGQQTAVLNHLNVRKRSEFEQILYTNADGSVLVLTCLQPGPNATIVHDGRNTSIPWSRYIADAAW*
Ga0068855_1005103753	F002850	GGA	VTGIHADIDALKGLHDALARYRHAQRDVTARGEDQLTATRASLEAKASRLRAQLELGQAEYTACQDRAAQADPDDPVDCSGYARAVQQNSERLEQIRLWQQRIDVEAGEFSGIAGRFADLLENDLPRMEEHLVAIIASLEAARRVRAPVSGS*
Ga0068855_1005103754	F061180	N/A	LFGEALEEVTPGIATYLSATEGHEAHLAALIERLSGYLETGAGAGLGIGRPPEVRGGMAGGTGQGTARRDRNSR*