NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058697_10041764

Scaffold Ga0058697_10041764


Overview

Basic Information
Taxon OID3300005562 Open in IMG/M
Scaffold IDGa0058697_10041764 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1724
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008846Metagenome / Metatranscriptome327Y
F091026Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0058697_100417641F091026GGGGGMWIGRSRFRAPRLPAVGRPRRLSPDEVAALKARPWPRLPWWLWLAVAVTTVAMVVVATGLVGSVPDQLPVAARRSPPAGDLSHGVGDIRVPALEPQNQGLLVRRQASCPRLDRVTLVGTAAEVALLDAATDQLCALRSTAPIQRARDGLQQAGATVSFAEFELSINESTTDFGQSPPSVLVHAKFQQGAAAPERVAVVLAHEGSH
Ga0058697_100417643F008846GGAGMTDPMLVRRLALDLRNLADKTLELRGVVEDYRHDLVRTLEDDWCDPDELQALHRQVQELWGSMDRAEAKLRSGSRRMSPLLWLE*
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