Scaffold Ga0058697_10004920

Overview

Basic Information

• Taxon OID: 3300005562
• Scaffold ID: Ga0058697_10004920
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - As.Ma.e
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4273
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048551	Metagenome	148	Y
F061539	Metagenome	131	Y
F082142	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058697_100049201	F082142	GGAGG	MFATRQSQEPVNAEANRFLFELEQQFDLMRLRARRASLEQEERRLVEEQESLRNDLRPPVTSALGASESPADNGWMRGWWHVVRTRVALWRLELRRVGLAEEVRRLALLEGDIEFALRLKRRRSRS*
Ga0058697_100049202	F061539	AGAAG	MHLASDYIHPTPRAGRCRIRIHLPEEEQDAPVVICSELPNNGGTSVTYAAEQLAAEVIRSHRLPTPLVWIAHWPNAARDSEEETFELVVFSSYEVVERAPYLGETRAWIGEATWRPLNRSTVEVLVDRKV*
Ga0058697_100049203	F048551	GAGG	MIFWAQMSFSPHKEEKSVELPKGYNLEAAGNNLLLKRPNGFLITAFGEGMATDSILRVAEADERYLRAVERQERFGSAADSETVILFAADVREARTEFLSALEAAYRG*