Scaffold Ga0058697_10002442

Overview

Basic Information

• Taxon OID: 3300005562
• Scaffold ID: Ga0058697_10002442
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - As.Ma.e
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6097
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005102	Metagenome / Metatranscriptome	412	Y
F040315	Metagenome	162	N
F093401	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058697_1000244212	F005102	AGGGGG	MEGRHVTEQQHGRYFAQELMLDQSGSNREQIQDALDAGERQEWHLVGVSDVLPERRVLLCWDTTRPSFGRSYRG*
Ga0058697_100024422	F040315	AGGAGG	MMSRLLRVGDKVINLDNIEYIVREDDGVVRIHFIHADIALWNEQGEAFRQWVLSNAGYCEGSGEGW*
Ga0058697_100024424	F093401	AGGAG	MSEETQFWGVAVEIYGQGGRPTNALLEFTGSTPESKPFLGYLVFSSRERADRFVQGQWQTLSQELIEQTVANIRRIRRDEIPAEHYVSLDGNDPVTWAKLLAGG*