Scaffold Ga0066700_10016305

Overview

Basic Information

• Taxon OID: 3300005559
• Scaffold ID: Ga0066700_10016305
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4031
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000284	Metagenome / Metatranscriptome	1378	Y
F078339	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066700_100163056	F000284	GGGGG	VAPKTEQARFAFAFGMVLAVAVTILAILTVSNTVSAHDIYSSLRDREGHLCCGGQDCAPVEAVVLPDGNYYLPKTGEIISADMATPSPDNRFHHCTYYPMLPMQLDWPGPVFESTSKTRCFFAPMNSS*
Ga0066700_100163058	F000284	GAGG	MLLRTSVAAFAAAISLGLWSEASNTVLAHDIYSNLRDRDGHLCCGGEDCKPVEAIGLPNGNYYLPKTGETIPADMATPSPDERFHHCFYYPMATEFDRSGSVWESKPKTRCFFAPMNSM*
Ga0066700_100163059	F078339	AGGGGG	MLTEENRTDILSLWAGLVSVVAIYFLIGSFWKAVLIGAFVGGSAALGYGTRWLLKGSFAFAVLAIAVALGIPPPDQWLQLLYEAREAVLALRTSG*