NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066700_10007554

Scaffold Ga0066700_10007554


Overview

Basic Information
Taxon OID3300005559 Open in IMG/M
Scaffold IDGa0066700_10007554 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5419
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014723Metagenome260N
F023077Metagenome211N
F102968Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0066700_100075543F023077GGALKKRIGVLAVLMMTAIALLVPPAYPATMNPQENVNLYTGNKLIIDSNQASIKSVVVRGNLTAATLSNNVYPSKNFTLTTNSTQLYTVDVLLSYQSPYTSEIVISDPSSGSKTQYTSYFVSGGDLNLTVFASFQASPSSGPTVPLGWSSFYGWVSEFGGAFPFWIKILYGVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKAYLWTEVVFRTLIAGFAISLAMMIGEVLVLLIAQYLFFVNLTLVSLVDFFSIFFVAALGTLVYLAREGLDRIFDLKPMMED*
Ga0066700_100075544F014723GGALSEQYHRLFLRWEVLRGWIPAIIFAAICVSLELLFFYNALNTGFVDKTVSIPIGSWNLPISIALSLALGNALVVVTLWMNVFESTAYVKAGPDKQVRRILYPLRMIRTAALVLAPFSIILFAPYIVEANWFANAVASVQAFKPTAESFYDWAFSVSQIDGATRFIISQMVAALGALTIGGLQLWRVKGTKNLVRAFRRRK*
Ga0066700_100075546F102968N/ALVFLNSKLILKRLTSVMITVILAFVLAVVGFEVLGIIGALMGGITGFSLQEFLTQRMRNKIGTEMQLTSLGKNDIEIDYNDLLEVRLVKSRLYLISENGSLTANFPRGYSRKIRPMLADLFETKFTDEESLRAAEAAEKENEKRQHSRSDRGKFSRR*
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Institute for Fundamental Biomedical Research
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