NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066704_10542331

Scaffold Ga0066704_10542331


Overview

Basic Information
Taxon OID3300005557 Open in IMG/M
Scaffold IDGa0066704_10542331 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)759
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006969Metagenome361Y
F021884Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0066704_105423312F006969N/AMQLQIGDRLTDSTGEWEVIGRPDTITSGKYARVRVQMFGQPAISELRTWGAHERVSVKRA
Ga0066704_105423313F021884GGAGGMRFLGAAAILAIVGVMLIPSGVAPAGAIGPANARPVPAADAKPPIARSRPEVQRGTRVLADRDRDAVFSLVLLLGMYEGRHGR*

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