Scaffold Ga0066704_10001827

Overview

Basic Information

• Taxon OID: 3300005557
• Scaffold ID: Ga0066704_10001827
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9517
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023811	Metagenome	208	Y
F041660	Metagenome	159	Y
F052494	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066704_100018271	F052494	N/A	LVRKIHSLLRKENAEQGISKKATIFNLIEDRARKSGEAYKEPSHNTEIKAKVALDAEDQDIFPRIRSDLAKGKIEGFRLSDSYPSVMETGKLYHYVQMPTHEYVRFETSGQSRSATIKENFQVVEDPYRLGNVIKRREIEEPIQPDMLKMPYKILTRRRKYFMVERDGGRREYAVMMDRSTHRGHELYQLEVEDVLNSPSSRTETRSINDVASMANYLIEEYSLEPTTLTKNQWLMSLPN
Ga0066704_100018276	F023811	GGA	LLRPKRGEAIASVLFAFTATGLIALLYNLNPFNSWALLVGVWASSEALMLYLFQNQRRNEKKFQKRPVSFPNPEGGGILGEYVNRPWHNELAELGRRYPSKKAKKKKKD*
Ga0066704_100018277	F041660	AGG	MVVSHDTKRILGISSLVLILVLLLARGLPFPFPGSQPSASPRIRYAPSLIFHDNVSFNGPAPTFNLTLIHSHSYMWTFNVTAGSVKINLTDPKTGNVFWTVGPRSLGQWHLNGTGSVSFNWTAPASTYYSMVLENLNITRSPWSSTWFVGGSLYFSCDMHVWDLDTPEVHFL*