NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066707_10621107

Scaffold Ga0066707_10621107


Overview

Basic Information
Taxon OID3300005556 Open in IMG/M
Scaffold IDGa0066707_10621107 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)687
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001745Metagenome / Metatranscriptome643Y
F066951Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0066707_106211071F066951GGTGGMLGKRNCRMGSCGGSAITALDHQALCLNHFLLCCYERLEGLDPRGRKFSAEPVDVPSMRAFVEECSRKALDVSLQSKNLNNLERGRLLDILLW
Ga0066707_106211072F001745N/AAIPAAIAGALKDVTGFAGCLVMIADQEARLVTVVTLWCGDDRVQRCGENIGWVHALLAPYLDRCLRVQTMVAHVPLLPAIRPETIAARECSVIEDLLCEDKTVCVA*

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