NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066692_10213758

Scaffold Ga0066692_10213758


Overview

Basic Information
Taxon OID3300005555 Open in IMG/M
Scaffold IDGa0066692_10213758 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1210
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035245Metagenome / Metatranscriptome172N
F036644Metagenome / Metatranscriptome169N
F102990Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0066692_102137581F102990N/AQLQEPLVVPLRLLWTVNVRVHGSCVGEPGMTGKKANRENQLNDYFRRRCCNYENFTCDRVWECAMCARQSVKVEPIMDEIESTTVTSRRR*
Ga0066692_102137582F035245AGGAGGMETLREEEVLRLEEALLKRMEERLTPLMEQAARDAARAAMQRLRLDMMAHISRHEETIQRLAKAALAEHHIPR*
Ga0066692_102137583F036644N/ARPYFFSNFQIDNQRKKLAVGVLVFDGVDGRVCDAALFEGRMDDLPSSGFFVDCLEIESSTGSMPKLPPELEMKNTVTVAPAGVTEDMIRSKTKDVVSGHYDATVTGVQLLHVPIVTVELLAAGKSYRKILQAATGKMIWDDTQKCSLCDQKSRAICEVCGGTVCTEHERACSSCRKHLCTDCVVTKGIVNKIPLCPTCKNA*

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