Scaffold Ga0066661_10060503

Overview

Basic Information

• Taxon OID: 3300005554
• Scaffold ID: Ga0066661_10060503
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2191
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F011479	Metagenome / Metatranscriptome	290	Y
F020766	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066661_100605031	F001571	GAG	LVPEKRLALIHRVIVPDKEYPKEYALLVTDSRSIFIRLEKTRSSYWLRGEMKFGTALVTDVIPKTLEDYESISLESLTADNTNLTVHHEDVTSLALKKEEPQFRAREFFVRLTMRRQGHRFQVYHFEMNCLQSSNSETGIKFYMVPLGVYFKPRRQTQ
Ga0066661_100605032	F020766	N/A	MDLATGGIVLFTIMVAAGIIPLIMALKVKTHSLRILSLLLGLFAVVHGFYHLAFGFQQELLADAVFEPVSLLLLIGLGAYYSKVGIA*
Ga0066661_100605034	F011479	AGG	MSAVSFEDWVSQSVSETMSKILGTTTWKSVNFFFDTKTAASDPEAFAAVLDKVFGFTAKVLQKKIAETLLNKVGAVQPSSTLDFRQILRLAKAKFPRAAVPGQLGS*