Scaffold Ga0066661_10046292

Overview

Basic Information

• Taxon OID: 3300005554
• Scaffold ID: Ga0066661_10046292
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2474
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025536	Metagenome / Metatranscriptome	201	Y
F042486	Metagenome / Metatranscriptome	158	Y
F053482	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066661_100462922	F042486	N/A	MVALGIHELTADWASAKWLLWIGLYLSLGLLVPWAMTRAWAHQHHSPLQPRLKQVFQNGELGLVSLMLAISVIWDLQKSQYTSYTIALGSVFLAITGIMAGAVWIESYCRRSTGTRFRPDRAWRDSRNLTLLVFSLAIVTEILLDRFGKVTAL*
Ga0066661_100462923	F025536	N/A	MRLADPAATLAYVSFLFGLLLVVFPVSFPRIIVQNWQNARLTPIVILFTVSLNLALYLGVAHQRSSKPGILAAACLGSVPVFLLAGLNFLLQATIAHTLSGNIPNALARVDEEILAHTYFALIAAIFGPFLVIRLGQQFRKTDP*
Ga0066661_100462925	F053482	N/A	MAGVSFIALMPLFKENHVNAAYDTTLSVMRNYRTQSITQSKRYILTFTSPGTITVQYWGVGVPVSPAPVTVATFTLPPDIQFAVQAGFPVAAPDSFGTGGTAIDFDQGMGVGSQNYIMFMPDGSSQDTLGNYNSGVLYLTRPGELYSSRAVSVFGTTGRVRGWRLLNQGGDKWVQ