Scaffold Ga0066701_10176843

Overview

Basic Information

• Taxon OID: 3300005552
• Scaffold ID: Ga0066701_10176843
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1299
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015414	Metagenome	255	Y
F036608	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066701_101768431	F015414	AGGAG	MLKSLMLAVACAYINPPGLQPNAPVVQATVPEILKQAYAMEPGTQKEIIIDHGDGLCSKVVIEPSTDEALNAFI
Ga0066701_101768433	F036608	N/A	VPETRISRRSGGERSAPESGTFALRVLWTLPQAHQAFVFHEIGGLCRHYLHLRSKPEDASGISSEELVSEVWAKLIGSITMPDPNDAAERSNFPDPSDWTIDPYVPENDGRVVWLIREVGGARALAHRCEDIRRRRWGRATPGVGRPLVQPAALPDIETDPDDGGLGPADAVNIWRGVLITAERTFQPDDDVCKLLRMLAKVPGVLEGSHG