Scaffold Ga0066701

Basic Information
Taxon OID	3300005552 Open in IMG/M
Scaffold ID	Ga0066701_10000011 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005552 Open in IMG/M

Scaffold ID

Ga0066701_10000011 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	103073
Total Scaffold Genes	104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	67 (64.42%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

103073

Total Scaffold Genes

104 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

67 (64.42%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008278	Metagenome / Metatranscriptome	336	Y
F016723	Metagenome / Metatranscriptome	245	Y
F026136	Metagenome / Metatranscriptome	199	Y
F064028	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066701_1000001127	F016723	AGGCGG	MCPTVLGRVQTRWSILIVPALIATVISIVTSNEGWIVLIGVYFVLGVALDTGFYPLIIRWQPPWLTFTLAAGEFVLVYILAHVLKVGLTNPEAVLLYWIAWTLAIWTKVVILPLLSLSWIENAGEFRSTDWSVAPEYQPLPISVFQPPDERSPVPQLAREFSSVHRLPAELRDLPSPSGVHRVPGAR*
Ga0066701_1000001142	F026136	N/A	MRLKPTRRTHTAFFAALGLIALAAPAVASAEEIPTPTIKVKAKAVPIPGFPGTGNFYGKGAAVESTFEIEGSGYGATPQNPKGGIPPLSAVNVFLPKGVKLHPQGFAQCSEATLKSVGPSGCPKKAVASPTGSVLGEVTFGSERVPEEATLQAFFAPGGGLLFFTHGSTPVSLEIVSTGHWVRASGKYSWELKTLVPPVASVPGAPLASARKIHIKVGAAFRKHGKVVPYGTVPKKGECPHGGFFGKVEVTFGGSNSFGEFGIPPITVTKVIRVPCPKR*
Ga0066701_1000001179	F008278	AGCAGG	VNVALILAGSLAILGAAIHGVGGEVLIVRKLSPGTLPSTRFGGPGATKSMLHVTWHMTTVAFLTVGSALLLSGSVLHGDSARGIGLLAAGASSGFAALAVGLPAAHTHSARSLFRHPAPAVLILTAALAWWGAL*
Ga0066701_1000001199	F064028	GGAG	MARIIVIADVPVGPNIDAPVLLDEEVKPDQLADEHASHQVIERVAWAVLDAQEVAST*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066701_10000011

Overview

Ecosystem & Geography

Associated Families

Sequences