Scaffold Ga0070665_100000022

Overview

Basic Information

• Taxon OID: 3300005548
• Scaffold ID: Ga0070665_100000022
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 379286
• Total Scaffold Genes: 416
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 288 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064701	Metagenome / Metatranscriptome	128	Y
F084381	Metagenome / Metatranscriptome	112	Y
F090229	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070665_100000022103	F084381	AGAAG	MAVLIPLAHVGHWLWVLYLPPVLIVAGSLARSTLAERRKKREEA*
Ga0070665_100000022213	F090229	N/A	MPLEGHYERQTTPLYKLNSREIKIASITFLVTIAAMVAVVIATVGDSNPPTPLGCIHAQTAGIVGAETISGCGAEAVAKCSHAARFDSPQASTVVTECEKQGVRF*
Ga0070665_10000002267	F064701	AGGTGG	MSAVEGRSARAAPAPLPLARGLGDSVQMPFGRVPSGPGPMLYYSMKHRTQLYLDEGQYRWLKQRAGEAGSIAAVVRDLIDAERARGVDAATDPLLSYLVDEAPGKGRKRTSVSSLDRDLYGS*