Scaffold Ga0070693_100533352

Overview

Basic Information

• Taxon OID: 3300005547
• Scaffold ID: Ga0070693_100533352
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 838
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001123	Metagenome / Metatranscriptome	770	Y
F037169	Metagenome / Metatranscriptome	168	Y
F103346	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070693_1005333521	F037169	N/A	KAKKQPLPLVLLKIGEQIGIPVEIQDQTVSIIDTEISKLPIEDVVRQLSPHIRLFLRADLTHAEKRALRLVLAEQAQATQ*
Ga0070693_1005333522	F001123	AGGAGG	LAKQNEIINEEIAGLHSENGVSGECSEIKKAFVEPTISVPVDVLEATTFFQAATSGVTN*
Ga0070693_1005333523	F103346	AGAAG	MEVIQVFDRPAFQSFYSIAGRLLVIESHDRELRNLIVDLFAGWQLTPVSLPDRSPDIRISFSCTEAQPSIPRDLDQFEIAEGGKCYTGATGFYL