NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070693_100099601

Scaffold Ga0070693_100099601


Overview

Basic Information
Taxon OID3300005547 Open in IMG/M
Scaffold IDGa0070693_100099601 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1768
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F013395Metagenome / Metatranscriptome271Y
F051385Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0070693_1000996011F000739GGAGMMTRVELWLKGLLAAAISGAAGGVLTGFAAVGIDPQHFNLQAGIGATFRIGTAAALINAVIGVAAYLQKSPLPAE*
Ga0070693_1000996012F051385GAGGMYRNKYLRVFSGLALLITCAIVVAQSLLKNEFANQLYYGTTLIAVFGYIFLTSRTKEEERDSPWWW*
Ga0070693_1000996013F000512N/AVIRILRETHETPESVAHSLALAGGINRFREPNYRAVWGWNRLAWIGGKFEERDPATGALLREVVELRQEPKYPAVNRWHIEKWLPPESYGSPRAWWAQTSEFAGGRSVPALGPYPARGEYEHCFTLEGPRGQFVQLTPTVAEHIARAIEWSRHHKRSAGKRALYDREQRQERNYDAYAYDILDDAVPAFHRQPFVTVV*
Ga0070693_1000996014F013395N/AMRRIFLNSATLLFCLAIIPHGPPAEFSKTEPLLFVFLHVDRRQNVAILRPMIAPDIGVQLDSGPRHLDPGTVLTCEMVSREHDAIVDGQVSKVSEMVLDCAEHKFVVKTLDFRPRRK*
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