Scaffold Ga0070696_100633672

Overview

Basic Information

• Taxon OID: 3300005546
• Scaffold ID: Ga0070696_100633672
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 865
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001356	Metagenome / Metatranscriptome	716	Y
F016609	Metagenome / Metatranscriptome	246	Y
F066198	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070696_1006336721	F066198	GGGGG	MSHDEVDLLRSVLARAYEKPSPFTLRLIEAVQDYIGTRTPRKPIIESLNINEKKDAA*
Ga0070696_1006336722	F016609	GGAGG	MTEYKWHEVYKAALLETDWSKMEERINAAEAALHARTHEFDLDHGGEPEENLAIEGALRGLRVLRVDAARWREKRAS*
Ga0070696_1006336723	F001356	N/A	IDCLKGYYRMTKTKGSPATDLRYRQVRVDALNRGRRGKHHDLVVGILQELETLSPGSAMEIPLADVGGIGLANLRSAVHRASASRGLQIGTLADEKNFYVWKKE*