Scaffold Ga0070695_100161921

Overview

Basic Information

• Taxon OID: 3300005545
• Scaffold ID: Ga0070695_100161921
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1571
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002139	Metagenome / Metatranscriptome	590	Y
F018589	Metagenome / Metatranscriptome	234	Y
F050630	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070695_1001619211	F050630	N/A	MSTDKKAQAAAASAGAGSELQVGQARTGKIQFTRRFPRFIIDVRLQVKMFQAGEFRNCWGRSTEMGQDG
Ga0070695_1001619213	F002139	AGGA	MTNRVSYATQDFQKMCKQAERDHESKKLVVLMERVKRQIAERDHLGPKMERTKRSATVTDTDPDFLRLPSRSVPFER*
Ga0070695_1001619214	F018589	AGGAGG	MYRPYSNAHTDFRPFRDVESHLRDLSQDFATSFNTGNYDQAASLFASDAALMAPLYEGAYGQRAIEQLLRQMGEA