Scaffold Ga0070672_100000167

Overview

Basic Information

• Taxon OID: 3300005543
• Scaffold ID: Ga0070672_100000167
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36306
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (51.52%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004159	Metagenome / Metatranscriptome	450	Y
F105781	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070672_10000016726	F004159	AGGAG	MATNNQDDHERAAAGLDFDNPIREKAASLGQTVAENGPEALFEEIENLLPESWREQITTFPIAAVILGVGVGVFLGMKKGDEIIAAGSSMISAAAIANVTSAMEKMGGMNSD*
Ga0070672_1000001677	F105781	GGAG	MRRKASQEILLRRVVAFAVVLLAFGCPKAEPLTAQKAEEILRAYQSANEPIYAEVPQRVWWSAKAPQDAYDVKALETLRNLERAGYLTVTESHDGDTTSYTGKVTQKGFTLIGTAPSNRGPCFRATICFKAYDGLRNFERHPNEPTTGHGDLVWHYERPTPMYELFTTKINKELQRPYASAVSFFWKDHAWHFDVMVRKSAM*