Scaffold Ga0070732_10007533

Overview

Basic Information

• Taxon OID: 3300005542
• Scaffold ID: Ga0070732_10007533
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5924
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F029198	Metagenome	189	Y
F033229	Metagenome / Metatranscriptome	178	Y
F036885	Metagenome	169	Y
F105952	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070732_1000753310	F001596	GAG	MSWFYSSTAPVDARNHASPAEVVACFHDQKNVLGRLAFLITGNLATADQAVVQACETTLQGNSPFRDWLLEWAKAATIASAISHGTRAIRICEATYKDRRCSHVEHLSQGDAEERAASLDLILEADTQKLFSELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAANCHAMTWLHDGHARQVEKNHEASYAV*
Ga0070732_1000753311	F036885	N/A	MTDKTDKTDKKDRERVIAEITLSHLMRLGKEQGCPVSRDQALAFLNQEGRAFEMWKHMMQAAEEFIAGSLFQHSFSSRGHNGFAPRPRPVRSAGNAAL*
Ga0070732_100075332	F105952	GGAGG	VSSRRGTRNAKRCEPIGTSADPVSRERLGSRVTVLAIEQALMKLGIHARLSDIVAKAQSNENGIVQSHTCHRRQMC*
Ga0070732_100075334	F033229	AGGAG	MYSTTFLNGVPTIQRDGRNILGVLDQNWKFASEICDLLNSLEDDPHIFLTEHDRKWLKAMDRAFRKVQHA*
Ga0070732_100075336	F029198	GAGG	MDSNANSRAVRVHGEVIVLHCWACGTAHCVNQELCVPGGLALMVCSNSNCRMSMFLVNELVLDDKTRKQLTKSELNSRVAYSRFWK*
Ga0070732_100075339	F006278	GAGG	MFRAEIRWLAMGPTLKLEGKLAADWAEQARSLVTKDVLPKGLTVDLTEVSYVDSAGEQLLKWLAGVGAVFVAGSVYALALCDRLRLPLMQRIAERHKRRDGSCRKRSSIKHSAPAERI*