Scaffold Ga0070732_10000462

Overview

Basic Information

• Taxon OID: 3300005542
• Scaffold ID: Ga0070732_10000462
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26163
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (78.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002809	Metagenome / Metatranscriptome	528	N
F012444	Metagenome / Metatranscriptome	280	Y
F012766	Metagenome / Metatranscriptome	277	N
F027130	Metagenome / Metatranscriptome	195	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070732_1000046212	F012766	GGAGG	LETLREEEVLALEEDLLVRLVERLTPLVQRAAADAAKTAMHQLRLDLMTHISRHEDTIRRLKRSEQALNHVPSTR*
Ga0070732_1000046213	F027130	GGAGG	VLDRETGKENKLNDYFRRRCVNYERFLCDRVWECALCAKQAGKVQLVEISLPTKVEALRRR*
Ga0070732_1000046221	F012444	GAG	MGKVMVSLTDEAEDLVRTEVDKLYYGRTGGFSIFFEKLIRQYFNGNMKDPAGKKLR*
Ga0070732_1000046229	F002809	GAGG	MYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILMTHYPEGYMIYPDEINKTPWDYPSLRPIVDLDYLIELLKRARQLRRAKMDIERRLGKKLVPLS*