Scaffold Ga0070733_10170147

Overview

Basic Information

• Taxon OID: 3300005541
• Scaffold ID: Ga0070733_10170147
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1419
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000445	Metagenome / Metatranscriptome	1131	Y
F051314	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070733_101701471	F051314	N/A	DWEIVPRRGIWIEELEAELARRGLPVLPATGWALDMGRFDEAGSRRDLEQFLDAREVAAGTRRDKSAAP*
Ga0070733_101701472	F000445	GGCGG	VSGDARGWRMALVPDALINPPDRIRAALPDVMRVLEAGGYGVLHLPPPGQHALLLAVIADQVAEYAHHGYAVVAIGVHGKSGDGLHWRRLVPLLRQRGVALPPRHLIRPDVDAAVEGQRLAGFLGGYDLPVEEQRRWRV*