Scaffold Ga0070733

Basic Information
Taxon OID	3300005541 Open in IMG/M
Scaffold ID	Ga0070733_10001580 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16852
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

16852

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000838	Metagenome / Metatranscriptome	866	Y
F012141	Metagenome / Metatranscriptome	283	Y
F047844	Metagenome / Metatranscriptome	149	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0070733_1000158011	F047844	GGA	MRSAFSARALLALAACIGCTTAWAQDTANPVNSLGDLARQTRAEHASADNKPSKAQELVDEMQQEQEAADNAPVGYKNYNAGEYRVFVPYPFSLEGRENGGAVLLGSRIGLSNTEVMVGNPIPVPPNLNDTSLLNVVRQLASMQGAQAYCNAMPQASIPQSSMTQGSMTQGSHKTYRCSWQTSPRLLGHEVWGSEEFILISNSVSNAVTNRLIPVMCVSPDDPHQMCVVYDTWGHNTCSDREHQLYGWDHSKAQAAADARYRDERTTAQVCDQVIYPSIQLKEDIVVHPVTIAEGKLLKPVSAVAQDTSVVAGPQGSSSAGSSLADLARQTRQAPHGKAQATLDYAEGRTAPTGFQAFAMQYCPNPQQCSDASVVVPEKAEVVSRVNGQYIFKIMLNGDPVMLYAGPADVNAPYRSMTDPDYIRMRDLANANGWSREKPDSVSTQEMTIEGKPALMTRFRYQRDQKKWWIGERTLVEMRGGQFLVGCAAREERFAEAEALCTTLVNSLRLQ*
Ga0070733_100015804	F000838	N/A	MSGRAFRATSRVVFFLCGVTSLFTGVPYLMLRGTELPVQSEWVVFVVALAAVGLFSVTVAVLPRSWVARACKKDRDDGQLFLVPLKWLGGLGAISYLVALVAYLAPHRWDLNAQLMFSLCPMYFLKMTFDPSLVAVFFLLAPMNAAVYGSLGLTLGYAWLAFRKRT*
Ga0070733_100015809	F012141	GGAG	MGDRYWLWVGVRLLVGVAIVAWALSYLGTGSGEKQFQKTLDAIKQVRSFRAAYTATLPTQHNELLWEMDCDRDVAHDQNDYVQTNTNPPGEMKTDQLIVAGRTYDHQTDGSWSPARYSRMNGSAKAFCNILAQGTDISPMPPIATMIKRAIIQKGDKKTVNGVRCREWLVTMKGAPSGLAHDTVCIGLEDNLPYEMTVDWEHSRTSFSDYNVPLKIDLPEAAVQPASASAGSN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070733_10001580

Overview

Ecosystem & Geography

Associated Families

Sequences