Scaffold Ga0070733_10001472

Overview

Basic Information

• Taxon OID: 3300005541
• Scaffold ID: Ga0070733_10001472
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17513
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001352	Metagenome / Metatranscriptome	717	Y
F004703	Metagenome / Metatranscriptome	427	Y
F047788	Metagenome / Metatranscriptome	149	Y
F071605	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070733_1000147210	F001352	GAGG	MSSRELGPEWVLSRFISPVGAAQDEISELVIVARRLWPRIQKYARREQPEKNYDEALGLATEVWEGLLQSVAKTVQRSNRKNWRIKNTEAYLFGAFHHRFNRALKKERRQREIIQHLPSSGDLERLRQAHDSKVVHDLEQSIQVNEAVRRMDDWTRKVWAARQYGYSWREIAVHLGLTEPQAKLRFRYAIGRLRARLGRAA*
Ga0070733_1000147219	F004703	AGG	MVDNAATPQQPVISIRISEALRLRLETLKKIMYLKSGQNVSTSEAAKQLLESARDDRLELVDLLSQPTDSLLSIRRKADSGLPLSLAEWTLVAHYCAVGAESFMNTAQGQISYESLAEILEAFLAAYTIARRPKNSMRDFVYLRTLPWDKQVEAKEVDDIGSDDVRRVVMRTIQMLRNPAQKRRKPILSVRNLYTLLDEEKFSNVEKLNEALWPHWSALWRVCARGHYSLHRKPLREKVPSETNDEDFELAVQPALPSLEEGEYRLDLVREEGNEFSPRLQFPGTLSPRYPVVGYPRIAEFRRLLEGLDLERDLCQWQGYYFYAHTAIVENEQRGVFFFARENGIAFRFPMEHWQSIRNLFRRAWQAPEVIHTWEAQALEYGEL*
Ga0070733_1000147222	F071605	GAG	MSAMPFPGSFSLLPPLLWVAAMLLLLLAVRSVLQNRPSRKGRDVETIEWGPPRPSLIQRWRTNMGRIRFRLPRLWQRQMPEIAPKPAPSGPANASSDPLKKPTQPMLALFVSTVNGSTSGAPETKPKEAFVWEKAKGIE*
Ga0070733_100014729	F047788	N/A	VFVPISTESRRVLKQQEEFNVEEKRILDLLSRGLSQDFPNPQRAGCPDSAMLKGIALHKVPLAEADPWLDHFSSCSPCFQEFTQFRKQAVDGRRRAQLWLAAAAVLLFAVAGWLWVRTQPSVQTAATVVLDLRERSVARGENSAETKQIALEIPRTAKHLVMDLPIGSKEGSYDLALLNEAGDEVLRATGTATLENQIVILRADIDIRNVSPGFYLLGLRRLGLEWSRYPTRVT*