Scaffold Ga0070733_10000062

Overview

Basic Information

• Taxon OID: 3300005541
• Scaffold ID: Ga0070733_10000062
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 104339
• Total Scaffold Genes: 133
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 113 (84.96%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F001742	Metagenome / Metatranscriptome	643	Y
F002004	Metagenome / Metatranscriptome	605	Y
F002288	Metagenome / Metatranscriptome	574	Y
F002560	Metagenome / Metatranscriptome	548	Y
F003851	Metagenome / Metatranscriptome	465	Y
F004412	Metagenome / Metatranscriptome	439	Y
F036259	Metagenome	170	Y
F062503	Metagenome / Metatranscriptome	130	Y
F073871	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070733_1000006210	F002560	AGGAGG	MVEHNPPPSADSIRPPAIPLPIALYVSGELIFELYDGGQPSRKFSIRWDRLVPTKENEPEAQSPQASLRTRQD*
Ga0070733_10000062109	F062503	N/A	MGVELTMKDLSQVLSQKEMDIERVRKEIKALHFVIPLLAEDADRLEHGLASLPVPQLGETGTTAVKEQPR*
Ga0070733_1000006211	F000208	GAGG	MRIRVTTRADLFEKRKQQHIERGYRIEDERPIPVNGLCSFIAVSEIPESDGVGDLVAQALNGMAR*
Ga0070733_10000062121	F002004	GGA	MRTIPNSRRLDGHISRALNKIKKPSTAEEITELLNRDLEPQDRPFQTKEVAEWLRNAGDTALTLYWSRIRLRR*
Ga0070733_1000006239	F073871	GGAGG	VPRQSPISFPMGTKNELIIDGSEAMQALRARVARNQGVHVHTPKGITE*
Ga0070733_100000624	F001742	GAGG	MPDTETGNRGRNRQKIPRIGPEEAARVFAQCEHLLDSSTVFVENLRQAGFARFLAPLHQQILELAVQPDSWGERTRARLISELFAGLKGIPAEDARVEEIVQVSNVVVPCFLLELGRRRQHIEIEFPANPCDSAARFALRAGPSYPVHSVNSEQLVRLVAEAGEELVGLCYFGDQRSREHIEAQLAFTGATTDS*
Ga0070733_1000006257	F003851	AGGGGG	MKRRRLAAATCRCIDEETKRVLRALEEAAHGRANTNDPIMERLRQCPEAFKVGEVLGKAFDSLRYAQDGSEIGDRYLPPSGTVIPPLV*
Ga0070733_100000627	F004412	GGAG	MQDQPSNAEPALPPEQAAAKAAILSECERLAEAGITFVAVHFDGSGDEGVNEDVKCYATEDYAYEESEAQATNFSHLQEHFDALVPYGYENNCGGFGDVILNVKTRKITVERNDRFEDYTTSSYEV*
Ga0070733_1000006284	F036259	GAG	MFGAHRRGFDWKEIAKVLHVTRAVGRATFWREIKRSRSKSVAAQPPAIVIQDESDSDAKKLRKPRAYR*
Ga0070733_1000006286	F002288	GGA	MGEADGVHKRRMFRWPKEARELVREYKERTKRSQELTETGRRMLVTKLAATSGNPRDACLRFLRELGVNHKRAYREWTKSEQQRLLDLITAMPVAEAAKILRRPAGSVRSMLHRLGIGGKTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKSRSLTTAGTKANIIHADDFCQFVKEHGRAVASRRLTYEALWFVQNYVFPPSHAELLSVRGTYKRHDAGDETAGNTESQSVSGSEEDGGQEG*