NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066697_10123856

Scaffold Ga0066697_10123856


Overview

Basic Information
Taxon OID3300005540 Open in IMG/M
Scaffold IDGa0066697_10123856 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1517
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067557Metagenome125N
F073369Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0066697_101238561F073369N/ADDVKLWLPRHKCRICGVEVEFAQVKVHYQTTHPEYGKWGRQLHTLMWLVLGSDVALIIVDALYLRSLSPILNEYIVPAYLGGTCFLLGGLHLRKLIAFRDAWEKTHGSSTSQVA*
Ga0066697_101238562F067557GAGMKCPICGVEVETTIWRPHREASHPDYVQWVRHKLRLTIYVIIPSWAALIVVDALFGRFLAPGFLFLGVVTYAIVAYALGTLIVVYLVESRKIRELRAAWKETHQFP*

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