NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066697_10002586

Scaffold Ga0066697_10002586


Overview

Basic Information
Taxon OID3300005540 Open in IMG/M
Scaffold IDGa0066697_10002586 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8120
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004042Metagenome / Metatranscriptome456Y
F005666Metagenome / Metatranscriptome393Y

Sequences

Protein IDFamilyRBSSequence
Ga0066697_1000258610F004042AGGAGGMNTKKLALVALLVSIVSPVSQAQIKHIEMRVEGMT*
Ga0066697_100025863F005666GGAGMKVLSLRLLLPIAALLVAFGPNPARAQAPLEPAQMSPRTAFYLIWHGVPSPDVRKANSLLALWDDPDFAPVSSAMVSNLMGSSAEKTPKEKLIADEIQQYATLLENSFTIGYVSEPQRRAASKAGGSLNSKPAWNGMFLVYDRTGKEVLLSKAVLRLRTEEREAPRLSQVTIGGAQVLKAEGKSGISYWAEHGKYAVSTGERSVMEEILGRLDGKLRGAASLTQSAAYQEAQANLGSGLIEFFLRIPDLENLAADSKAGTFQVGPLLDAAGVAALHSVSGHVSFEGAKTHVQAALLGDAATGTPFDVWATGQSSLASLSFVPVDAVSYTSAQLNFLGIYDTVKRVARAAFPQAQQGNADLLDTIAQHKLGMPAAEALGLLTGEFASMQTSASMDSTKQVYFLGIRKRPETLKLMRTVFSDQITSERNEDDITFLKISLGGKQGSTQWNSFNLAVAPDMILGANRVETLREVLAHRAHASAVEGLATAPQFQAGRAKFPEHLNGLSYFDFQKVDWQALKDRWIEEAKKSPVARTMNSSQNVVPSSAPDWLAQCNPQVFSRHLHYSVSVSWKDSKGIHWDQWVE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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