Scaffold Ga0070731_10000104

Overview

Basic Information

• Taxon OID: 3300005538
• Scaffold ID: Ga0070731_10000104
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 157586
• Total Scaffold Genes: 155
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 136 (87.74%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004485	Metagenome / Metatranscriptome	436	Y
F005865	Metagenome	388	Y
F007233	Metagenome / Metatranscriptome	355	Y
F008958	Metagenome / Metatranscriptome	325	Y
F033134	Metagenome	178	Y
F037842	Metagenome / Metatranscriptome	167	N
F044617	Metagenome / Metatranscriptome	154	N
F065986	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070731_10000104121	F004485	AGGAGG	MSNRERYTLSPASAEQFCQFWSAHMDALERHLSAKTWAIAAFTVVLTAYPIARIATPAILHAVVPDVVRTVLNLIIR*
Ga0070731_10000104134	F008958	AGGAGG	VKLVRFEDINGRETFVNAERVNHISDYGSGTTEINFGGEKATVYVAMDVAKVASTLLKAAKT*
Ga0070731_1000010418	F005865	GAGG	MPAPEPGHEWVLSGVNPRSDSVAESELLKAARSAWPKALAHVRQVQSQSPFNDDGLLVAEVWESVLQSVSMTLERMNGRRGEIGDLEAYLLGSFYHRLNRALRKEQRREEMIRLVSSVEELEVLGAENQAEQQDIEGALHAQEILDRMDAWSRKVWVAREYGYTWKHIGRVLGIPGDSVMLRFRRRMKILRARLSGGR*
Ga0070731_1000010465	F007233	GGAG	MANRKQREHQRQLNQDTFSDGIKGKVLEAVSISNELECRYISLEFEDKTELTISLDTRLTGKLELFDCKSGDHRLVRKIGLIPDDAPVWRPKD*
Ga0070731_1000010466	F033134	AGGA	MKQEQESKQLVTFSSLHIEVLGPKELGNSQQAIRGVTEFLHRVELDVGKLLRERAEMSPILDGFRLRFG*
Ga0070731_1000010467	F037842	AGGAGG	LKQKTVKVRGEGVEYPALTGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKAGNIVKWRELKTRPVMRQVARR*
Ga0070731_1000010469	F065986	GGA	MSNIAKRQGRMIRKGKEVQYGSVRIELIGPTELLHDREAKGAAIDFLRTEILASKDWLKDCARISPSLKRFRLISIRK*
Ga0070731_1000010470	F044617	AGGAG	MSTSPQPSRQRPTVTAITAEERRKLDERVRDKHQRLRNRYPEIYGKVVDWIHHYIEDGTLYVCIRFQDKSDFALEFSPQIVRVGTELCDSATDDFDVIRNYYQEERE*