NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070731_10000104

Scaffold Ga0070731_10000104


Overview

Basic Information
Taxon OID3300005538 Open in IMG/M
Scaffold IDGa0070731_10000104 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)157586
Total Scaffold Genes155 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)136 (87.74%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004485Metagenome / Metatranscriptome436Y
F005865Metagenome388Y
F007233Metagenome / Metatranscriptome355Y
F008958Metagenome / Metatranscriptome325Y
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N
F044617Metagenome / Metatranscriptome154N
F065986Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0070731_10000104121F004485AGGAGGMSNRERYTLSPASAEQFCQFWSAHMDALERHLSAKTWAIAAFTVVLTAYPIARIATPAILHAVVPDVVRTVLNLIIR*
Ga0070731_10000104134F008958AGGAGGVKLVRFEDINGRETFVNAERVNHISDYGSGTTEINFGGEKATVYVAMDVAKVASTLLKAAKT*
Ga0070731_1000010418F005865GAGGMPAPEPGHEWVLSGVNPRSDSVAESELLKAARSAWPKALAHVRQVQSQSPFNDDGLLVAEVWESVLQSVSMTLERMNGRRGEIGDLEAYLLGSFYHRLNRALRKEQRREEMIRLVSSVEELEVLGAENQAEQQDIEGALHAQEILDRMDAWSRKVWVAREYGYTWKHIGRVLGIPGDSVMLRFRRRMKILRARLSGGR*
Ga0070731_1000010465F007233GGAGMANRKQREHQRQLNQDTFSDGIKGKVLEAVSISNELECRYISLEFEDKTELTISLDTRLTGKLELFDCKSGDHRLVRKIGLIPDDAPVWRPKD*
Ga0070731_1000010466F033134AGGAMKQEQESKQLVTFSSLHIEVLGPKELGNSQQAIRGVTEFLHRVELDVGKLLRERAEMSPILDGFRLRFG*
Ga0070731_1000010467F037842AGGAGGLKQKTVKVRGEGVEYPALTGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKAGNIVKWRELKTRPVMRQVARR*
Ga0070731_1000010469F065986GGAMSNIAKRQGRMIRKGKEVQYGSVRIELIGPTELLHDREAKGAAIDFLRTEILASKDWLKDCARISPSLKRFRLISIRK*
Ga0070731_1000010470F044617AGGAGMSTSPQPSRQRPTVTAITAEERRKLDERVRDKHQRLRNRYPEIYGKVVDWIHHYIEDGTLYVCIRFQDKSDFALEFSPQIVRVGTELCDSATDDFDVIRNYYQEERE*

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