NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070731_10000059

Scaffold Ga0070731_10000059


Overview

Basic Information
Taxon OID3300005538 Open in IMG/M
Scaffold IDGa0070731_10000059 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)213501
Total Scaffold Genes224 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)148 (66.07%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000078Metagenome / Metatranscriptome2550Y
F000175Metagenome / Metatranscriptome1756Y
F000548Metagenome / Metatranscriptome1036Y
F003701Metagenome / Metatranscriptome473Y
F057528Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0070731_10000059151F057528GGAGMRLSLSGGSAVLSKGPITPGTMGNITMMTVFGKVSAQVEFLHTGADGVPLAQAFRFLTMEDESLQRFTAAAKQMEEEGFSDAVPHPSGLSAPASETLGLLLHSVRRLAATLVASKS*
Ga0070731_10000059192F000548N/AMPNESSTGPRWIGIPVRVCAMTFLFTLLSFAVALLLGILGTVVYSQVKHVAPNMTFAYRHVAFPFAITAGAIVMVLSIAMEIRNYRQRKTLAGIERVS*
Ga0070731_10000059209F000078GAGGLDNLYCLRCNRELEAGQKSVAVFLFAQTVGVRPRQKSSAQRICFCPQCSVSLAMGPAPEGALNLAAWQMIRDIVGADPALTEAAWENLHGIEEGLLPATGTNGRLPGRAGSYLDF*
Ga0070731_1000005956F003701GAGMRESTLPSTSGRIGARTKGMKNVCLLFRLALFCVLSFCLLLAGCAEKKKPVAPTPPAIRSQLPPASAEIVEHCVVVKQENANTVTCSCQLVTTVIDSRTGHTKLVCKRMKEEK*
Ga0070731_1000005963F000175N/AVDENRKGFLLIAATILAARKLSQYEAGARIPATIIAITDAVMWAEKILSVIDDRWPPK*
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