Scaffold Ga0070731_10000056

Overview

Basic Information

• Taxon OID: 3300005538
• Scaffold ID: Ga0070731_10000056
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 215074
• Total Scaffold Genes: 205
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 130 (63.41%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000175	Metagenome / Metatranscriptome	1756	Y
F000688	Metagenome / Metatranscriptome	937	Y
F001021	Metagenome / Metatranscriptome	804	Y
F001371	Metagenome / Metatranscriptome	712	Y
F003071	Metagenome / Metatranscriptome	509	Y
F009983	Metagenome / Metatranscriptome	310	Y
F017173	Metagenome / Metatranscriptome	242	Y
F030837	Metagenome / Metatranscriptome	184	Y
F034119	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070731_10000056104	F003071	AGGAG	MKKLVAICFALALLTAGVASAQDAMQNDSMKAPAKAVPVTGKISADGKTFVSDGDSKTWTIVNPEAVKGHEGHHVTLTAHVYPDKKQVHVMSLEMAK*
Ga0070731_10000056116	F030837	AGGAG	MDGNFIGLVAVTLFFGIPLAAMYTYFRIRKLKTEERLAAIARGANVAMEPDLSEAAHSRRWGILLSAVSLGFVAMMAIIARTEPDAWKAAAAGLVPLAAGLGFLLDSALIRRDLKSATTTHS*
Ga0070731_10000056132	F034119	AGGAG	MRSFGKLLSSKLLSSKLLGSSLTSTRTFAYAALLGLSMFTIQPTLASAEDAHGKFTLSHEVHWQNVVLRPGEYTFSVKSVGPSEFLVVQGVGTGTDAMMMVNDVDSMKSDSSKLVLVSRDGHSFVSTMALPEYDMTLHFAVPSESASK*
Ga0070731_1000005616	F017173	AGGAGG	MASIVIDVPEPKKGSFNHTRPPGKLLQSQTLHLREALLKHLKDIADVLAIDPKTLKTEGAVSTYIQRATAILHTRAPNPSEKTVR*
Ga0070731_10000056201	F001021	GGAG	MTKAIMVSVISACLSFAAGIAVAERVHDWHDLDAVHAHVMEAIGELDRARAANHYDMKGHGAKAEEHLHAAEHELHEAVETMRAER*
Ga0070731_1000005629	F000175	N/A	MDEGRKRVILIAAAILAARKLAQFEGGGHVPATIYAISDAIIRAEQILKEIDKRWPTPK*
Ga0070731_1000005659	F009983	AGGA	MKISQICAVVMLLVVGSVLAFADGIHDPKIVIHGVNGGNGPLETCPPAGCTDVGFNFNFSVPKFGTGQVFFTNDSGKNWTSLTLVENGVPAADISCVQTEFLNCSTKTLQNGSVEIILSGVRGGTNPRNGILNGQSFVIQFSCVGNSCWPGGTGFSGHASAAPEPGTVALMVTGLGALISRRKQLLSRLRS*
Ga0070731_1000005676	F000688	N/A	MAEGGQRARAKLQSISITGGLLQLQHELSTGDFVEIAFHTRSGAICGMAEMLHPTRKYQSACLQPFRFIALGDEDHRKLRMALDSALDRSFLDPVSEQLQTPPGF*
Ga0070731_1000005680	F001371	N/A	MLLKRESKIRKATAADVEVGLICADRDGNRIRIDHLDRANQTLSYHFLNDELRVQEGIQERSIEQFVAEGWYIAASGSPL*