Scaffold Ga0070731

Basic Information
Taxon OID	3300005538 Open in IMG/M
Scaffold ID	Ga0070731_10000008 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	523476
Total Scaffold Genes	438 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	332 (75.80%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

523476

Total Scaffold Genes

438 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

332 (75.80%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F002492	Metagenome / Metatranscriptome	554	Y
F002979	Metagenome / Metatranscriptome	516	Y
F003336	Metagenome / Metatranscriptome	493	Y
F011872	Metagenome / Metatranscriptome	286	Y
F012141	Metagenome / Metatranscriptome	283	Y
F025789	Metagenome / Metatranscriptome	200	Y
F047844	Metagenome / Metatranscriptome	149	Y
F087514	Metagenome / Metatranscriptome	110	Y
F087522	Metagenome	110	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0070731_1000000818	F000036	AGG	MAYKETFWMACDSTEQLRAEYGPFHTRAEAEAEAKKLGFGYLLRYEHILGENEEIEEVRCIFVELPGATPVGVEPAPVTLHTRCATCGEASAHEKGWQAEVWADIHEFEHSRHRVRLFEHARGKGLKEIGDWRG*
Ga0070731_10000008253	F003336	GGAG	MGGTAAYGMYPRSIALPEIVCALNRAGFGNEDICMVLSPAHPVAEAVRDAKVTDIEREDGALGARMIGWISKFGAVVIPTVGFFIRSQAFFRALVTEQNFPALSRGSGTLLDLGFSECDAKRLGHQLSDVGALIYVSCPESSKADRALELLRRMGAREAASLAAIKVAGAAA*
Ga0070731_10000008256	F002492	AGGA	MSNKATSTSSASPAGWHVLYQAALFETDPNKMPLRIAEAETAILVRMKELFTITSDHIEEDLILDDALYGLRALRNCVVQEASAA*
Ga0070731_10000008355	F087522	N/A	MRRSLNILGSAGLAAMLSMAPVVGLHAQSHDSGEHKILLQADLKAGQVLRYELEAAGSFLPIADASGAILTPPRGPCDYALAAIVTLRPQAPDKDGNTPVEARYSETRVTSVGCALFSAVDFQRRLAALQASPVMFRVGPHAETAMERTRDGYFKYWDGGELLRKTTQDLLQTEFSQHPVAAGDSWKPRGQFAYARDHALKDLELSGADLRFRSMVQVDGKRCAWVTSQYVFSPIDLPAAGTASGGVIVPGAGNNAVAAVLHISLLLDPTSHHVAWLHRSQTIDNKLTLASPYETSDPRDDPAEPDDPQDSENPMPDLSSMRSDHPGRYPFMTFHFQEEARARLLPDQRSVEWLAALKRFEETPGPVSGAVPVAATKTLLPNAMIQAAKPLAVNRTTRVVVDSDSLMATPAGFTRYEKGLCRDVWFCATVSVALPGDVQVSEDTPLRTVYLARQEGLLLSVAVGPALDRRSVGLTEDEELRKEANYYLANYVWLAAKPGIGTNFSSATLDGYPGLITDFSATQRDLADIRGVLGLMLTPWGKVVPVSCSSDHASSADLQAICEKVVTSVSLQR*
Ga0070731_10000008356	F047844	GGA	MKLSFSVRVGLAFVVWIGCLGTLAWAQDSLGDPSANPGDSLGDLARQTRAQHTPSGEGTSTKAQELVNEMQQEQEAADNAPVGFKNYDAGDYRLYVPFPFSLEGRENDGAVLLGSRLGITNTEVMAGTPIPIPPNSSDNDLTNVARQLAGLHGASAYCSAIKEGTHKAFRCSWQTSPRLLGHEVWGSMEFVVSSDRLIPVMCVSPDDVHQTCVVYDTYGHNTCSDREYQLYGWDHRKAQAAADASNRDERTTVQMCEQVIYPSIQLKEDIVVHPATISANKATKVVAVAAVRDQTEGDTGSQGPSLAELARRTRQATHAKAETSLNNSEGSSAPAGFQSFVLQYCQNPQQCSEATVIIPDKTEVVSRTNGQHIFKTALDGEPVFLYAGPADVNAPYRSLTDPDYIRMRDLANANGWSREKADGVSTQELTIEDRYALMTRFRYQRDQKRWWIGERVLVQNRSGEFLVGCTAPQEHFADAEVLCTTLVNSLRLP*
Ga0070731_10000008357	F012141	GGGGG	MRDRYWFWLGARLLAGVALIGWALSYLGTGSGEKEFQKTLEAMKQVHTFRVASTTNQVGVQHNEMLWEVDCPRDIVHHQMHMVMVSSTNSGEMKQDQMMVGNRTYERGSDGSWVPNRSGYQGASAKWYCRNLAEGTDSNLMPQIATMIKRGILQKGDKKTVNGVRCREWLVTMKGGFSGLEHDTVCLGLDDHLPYEMTVDWAHSRTSFSDYNVPIQFDAPEAILQPASTSTGVN*
Ga0070731_10000008372	F011872	N/A	MQTGTMSGDSTTRKDSLKVEKVSLLILTLCVLVLVSLLVFKPF*
Ga0070731_10000008374	F025789	GAGG	MHLWRIRLVLLFGTVLALPPAFAAPFVLFPKVTELASPDGRYIVRNADREGASTDFVGTFHSLWLTESATGHSRKLCDYLGVAAVAWSRNDFLIVTQYSRRTSQALVFSATGSPDPVMLDKPTLTYLVPIELRPALRGNDHVFVEASRVEDDTLYLTVWGYGQHDANGFRWHCQYALREGAISCTEERATH*
Ga0070731_1000000841	F002979	N/A	VKPRPKSQKRQPGKKAEAASLRMFLVPCSCGRTFAVAEKYDQQGTAWSRYIVCPGCGKRHDPKNRLLQMGFHSEGYWKVDEC*
Ga0070731_10000008424	F087514	N/A	MAEATEGQDLRQDRPDGHSARDWQVLWFFIHLAAVYAIAEFVTPWLAGWTHGTLLPHLQHPTSSGRFEFFFSHIFAFSFIPAFLSGLVNARFKHKAAQFVWLVPAAILVFKFATFPAPSVFQSQFSAAFHQYFGSGFVIPESRDFQDLFSTASNPDMWRGMAQHQFTAPFYAGVAYSAAAWIALKIELSRKVAEGVKKWEQSRVEHQL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070731_10000008

Overview

Ecosystem & Geography

Associated Families

Sequences