Scaffold Ga0070731_10000006

Overview

Basic Information

• Taxon OID: 3300005538
• Scaffold ID: Ga0070731_10000006
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 540323
• Total Scaffold Genes: 479
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 325 (67.85%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000508	Metagenome / Metatranscriptome	1069	Y
F000822	Metagenome / Metatranscriptome	876	Y
F000969	Metagenome / Metatranscriptome	818	Y
F001431	Metagenome / Metatranscriptome	696	Y
F002981	Metagenome / Metatranscriptome	516	Y
F003708	Metagenome / Metatranscriptome	473	Y
F011701	Metagenome / Metatranscriptome	288	Y
F020062	Metagenome / Metatranscriptome	226	Y
F048481	Metagenome / Metatranscriptome	148	Y
F089720	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070731_10000006114	F001431	AGG	MWSIQDVSPEELAMLFHHYQGALAHGCDEGEECRAAWERTPQGERKRLVAAARLALLELAAAATHRDAERPYFAKPGEAEWGC*
Ga0070731_10000006123	F011701	AGGAGG	MRSLRLSRAWLFCALLTSLLLVTVGASAKNGRYFTGYYNLSGVQEQGDLIQVTLHLRLFNHSNSDLSSVVVTLLDSAPALNFRGNYEPVKVWKKQQFIEMSQEFTVPKLEFQQWTQAPAQPNLVILFQDSTGKTWQEGAQLSRREIAK*
Ga0070731_1000000617	F000822	GGAGG	MQRILKLCAATILAAAGAAHGQEAKVFHGEVSDSQCALNVHSLTRSHQEMLKSKSMGGTANTCAVYCVEHMGGYLVLSAGKDVFRLDRADLVHGFEGQRVKITGTLDTKLNLIHVLKIDLDEKE*
Ga0070731_10000006265	F000508	AGGGGG	MTNLNKVVTSLQNEYARLEKEMGRVGKALDALGHAGGKKLKKTGRILSKEARKRIADAQRLRWAKVRKQAAKLVKP*
Ga0070731_10000006300	F003708	AGGA	MKISTILIVIAVLLSFAVLSLHTRATPLGAASQADSNAPGFMQTLIEPASSVGPLKLGDSEEHALELFPKKDEDQRWEDSCGTTLDWIDATNPTGRGDLFIRLKKDKVFQIESATTRFHTAEGITTFDPPEKVARVYKDLRAYTLLTPPLSSLGDRPLVFWIDKKKGIAFTFAYYPDQHKRYLYKITVFGSNKTFCPEQETMNSPKWQSIPSYSLEPPPEMAPNRE*
Ga0070731_10000006338	F048481	N/A	MGLPPEGALNMAAWDMIRDLVSSEPSLNEAAWESLRGVIGLLGSGEEPESTGRYRRAG*
Ga0070731_10000006417	F000969	GAGG	MINDDVVKCPLCGGFTHIEKADLRDALSNPRLREQVERYITELLKSPVEELSFVGATQAGRDFQKDVHSWNPCVPMWRRSPKE*
Ga0070731_10000006421	F089720	GAGG	VITPQDGLPTAEVCSQIKQFGYAMSQKIRIYGEEFEVLSDPFASDGGIAIHVRSKRTSQTRVLQLPATIVHRVRQDMTRIA*
Ga0070731_10000006422	F020062	GGCGG	VRWKEYEPLRDLPIAQEPRAYSIHVIQTVQARPGKRSQRLQLAEAIPIVLRRQDGHRVPGKLRCVSLTGGLIVPASLLPPGSMVNVIFVTPKGPVTGTAEMLRPVSWTEQPFRFAALPDSGQHRLRAVIDMVYAPTEIF*
Ga0070731_10000006436	F002981	N/A	VPAGPTINIGEEYGTAKKNLPPAKIVLIAVAAVIVVVIFASFLKRAKPQASGSLDNVAAAEIPGQNSTMVALTFTLHNTSDKILYVHNIQASVKAPDGDATADAVPAVDFDRYFQAFPALKVGAQPAIPPETKIQPGETVSSSVIVVFPKTLDAFNHRQSVSVIIWPYDQQLPVTMTK*