Scaffold Ga0070730_10001125

Overview

Basic Information

• Taxon OID: 3300005537
• Scaffold ID: Ga0070730_10001125
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26467
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (70.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003202	Metagenome / Metatranscriptome	501	Y
F003851	Metagenome / Metatranscriptome	465	Y
F015496	Metagenome / Metatranscriptome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070730_100011253	F015496	GGAGG	VYNTDLVRKLCCEIAQEKDPEKAQDLMSLLQSVMKDDQEDIRIRMAFLAKKYAFVSDSKAAD*
Ga0070730_1000112530	F003202	GGAGG	MTLRNLAMAILITLVLAAGVGLHNYESARNAAVVRQLSDQLEQTKSELVDATTQLSEANKKLGFLESSKARVQVTAYALTEDFGPDPVFSNNAPAKSAYAVPKHTLPAEKVLNVALSPMAERKLHASLNDTIVLMSGDRARNHLARFVDRTAQTETRSVVDILFADAHEARIWGRRSFFAVNISRPDSPFQQ*
Ga0070730_1000112543	F003851	GAGG	MNRRKLAATSSRTSDKNAKRVLRALEDATHGHAIWNDPIVERLKQCPEAFKVGEILGKAFDSLKYAQDGGEVGDRYLPPAGTVIPPLV*