Scaffold Ga0070730_10000180

Overview

Basic Information

• Taxon OID: 3300005537
• Scaffold ID: Ga0070730_10000180
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81093
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (87.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009891	Metagenome / Metatranscriptome	311	Y
F025246	Metagenome / Metatranscriptome	202	Y
F027443	Metagenome / Metatranscriptome	194	Y
F034259	Metagenome	175	Y
F046586	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070730_1000018033	F025246	GAGG	MDLRCPKCNSTDLKKVSLAYEEGHFRIEARTRLRAVVAGGGGPDLVVGRATTRGTQQSALSKKLTPPVKWSYLKIIGWSALVFLCGCWLVFYVNTVTTNATTVLTAPLTAFALISAAVFVLLLFFVWKHNHSTYQKQFAEWDSSFICQRCGVASLQTGVDA*
Ga0070730_1000018040	F034259	AGG	LTEIVSKRIDFAKVRRAEGRSLNTAVRELVQLIKPVAQQHGIDFQARLDEASARKSEERRLLAERLQESVVPLFICDRGGRPDRIGSCVLVRLDSDLFAFTAAHVIREAGNARLFAPSEGRGGKLLPLPRCIAHLSSSEIHNDLDVAVLVLSAPQLGPFERRVFLAGTEIDLNDQPDDQGLASFYFVLGYSASRTQVKVSRTERHIHQQSFHCSTNPVDATEYLQEGMSQAHHVLLDFDHKEIVIGGRRVNPPKLQGVSGGGVFHISRETKQGPLVAIATQNRRNSRLIVGTRIKHFLAMVRELKTRQF*
Ga0070730_1000018046	F046586	AGGTGG	MQTRAPQGQYRVIGLDPIDTLTWPSGPLCKDCETLDEALDLADHNRALYLWVYVYDHAGVLLHETGCHPEQLERIRELNQKPPEGPKTKP*
Ga0070730_1000018052	F027443	AGG	MSKPDPYGDWVLFPADEGQSLNRPAIDDELILAAREVWPRVLVHAKRELNADGLGSESASMAAQVWEQMLRSVSKTRRRNTDPRQPIADLQSYLFLAFVHRFNRAVQQEQKRAERIELVSSSVDLERIESAQDAGWVEELERTIAIREITDRMDPRTKKIWQARQLGYSWKEISLWLGTTEDQARKKFDYGVEKTRQNLVRLLKAGKSKKTG*
Ga0070730_1000018068	F009891	AGGAGG	MSIINKPPQHVKREYELEEPVALVVEKYATFIDSTPDHVVNSALKMLLWKDKHFMNWRKQQQQAARKEVPITATQKSQARA*