Scaffold Ga0070730_10000041

Overview

Basic Information

• Taxon OID: 3300005537
• Scaffold ID: Ga0070730_10000041
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 156829
• Total Scaffold Genes: 148
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 127 (85.81%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000065	Metagenome / Metatranscriptome	2788	Y
F000274	Metagenome / Metatranscriptome	1399	Y
F000309	Metagenome / Metatranscriptome	1327	Y
F000850	Metagenome / Metatranscriptome	861	Y
F001829	Metagenome / Metatranscriptome	629	Y
F001932	Metagenome / Metatranscriptome	615	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070730_1000004139	F000850	GAG	MKKPELTDMGWLGPKDEMDRASHLIGKCSECHETLCVEKAKADRQQTQLETREVLDQVFRAHIKLKHSEDFSHSG*
Ga0070730_1000004144	F001932	AGGAGG	MRQKLVLWFLLVLTGFLIGFILQYSRLQRVQQDLLASTKQLGSCRSSQQLAQLRDTTTMMYLEVVQKNYGKAGEYSGAVFDQAQQIASSTEDPALRNFLREVLVTRDQITADLAKGDPAALSEIQRLLSNLEHTAKH*
Ga0070730_1000004145	F000065	N/A	MTHRTKEPIPKLRKAPQPPLSHAGAIPDSDRAKRPPLSEPAATSQELTPGDRVEGLGDFGKPTGEFGTVKQANEDDAVVKWDDDGRVRVHQPSLKKV*
Ga0070730_1000004159	F000274	GGAGG	MNLKIVTGLIALFMFASAAGLATAQDTTKTTHKKTRTLTGCLQKGEDANEYNFTAKDGGTWEIKSDSVKLDEHVGHTVKIVGVVSNAMAHGMKEDTKEEMKEHGMDKHAKESGHMTVTSLTMVSDTCQK*
Ga0070730_1000004174	F001829	GAGG	MRRQYLHLSAYHCDSCAGPVIAGWLGVRENEISKETDVRHVGAICLSCGHRQRAATEPARARHLMPMEWAQADAVLASRLKSAFVEALNLAELQ*
Ga0070730_1000004180	F000309	GGA	MSADCVTENPRMEADAKPSLDRTLECAIVVSWSDLTHGTRTDLIHVEYGFAPTGMLEYLKVWSSIARGHWLLACVCWTSENTFHSTGVRFDNGYESEGLAHILEFVMQHQNSFALPPNLGRQGLLQISTPTAEESTAAAALIKEVFDHLPSTVAEPAVA*
Ga0070730_1000004182	F000042	AGGAG	MTNIKFVVRVNHSGTRAPAYVQRIGKTPFQMTNNRKLALIMGKFTAEDAARSMQNSRCTPEIVPVQVSA*