Scaffold Ga0070730

Basic Information
Taxon OID	3300005537 Open in IMG/M
Scaffold ID	Ga0070730_10000015 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	223917
Total Scaffold Genes	218 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	167 (76.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

223917

Total Scaffold Genes

218 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

167 (76.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F001916	Metagenome / Metatranscriptome	617	Y
F015893	Metagenome / Metatranscriptome	251	Y
F021509	Metagenome / Metatranscriptome	218	Y
F085961	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070730_10000015132	F015893	GGAG	MSAQENTIQVKKTRRISSDTWAVVLALLAALLVRMGVFKHVPW*
Ga0070730_1000001515	F000188	GGGGG	MGVKPELAFDVCWEIYRGAREVLETKRGISALNWKDTGKFLWRPDFRPRLNEWVADFALAGQKALDEPEWASRMVLFRLYYLGLAPYENARHFLGLSERSWVNWTEEVRRRCGKELLLRGMFPPRRYFREGS*
Ga0070730_1000001518	F085961	GGAGG	MVTRPSQPPWEFLLSASRNSLQSFELSRLAHAANLRKEIAAMLDQWLEENAAAMLARWLLEQRERAARAPEVLSAAESRSNGTHSVSDNFLADRGAPRPATGSPI*
Ga0070730_1000001521	F000536	N/A	MVELTPLQIQTLERLFEAGFRPIAIPPYESAVGVRRGDCAALLSPVANGGLKMLASPSYIVAGNLSVRLKRGQDEVFVWKKTELPATPERLQELESFRQELNSILQMPPTQ*
Ga0070730_100000156	F021509	AGGAG	MSSVIPAPSFFEKLTGAIYLDYVLKVAGVGGFVFAFLASWHTLGLGVKFGMLASVSAWLVGSRFTKIYR*
Ga0070730_1000001560	F001916	GGAGG	LLSDHVISIAGHSITITSHDIFLTGVSIVLGLLFFTLVYFSRKRIVVLRRSGSTDQITYELSRIADALDRIANQPAERAIAAASRRQQQAQMPPPLQRESKGVAFSMFGR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070730_10000015

Overview

Ecosystem & Geography

Associated Families

Sequences