Scaffold Ga0070730_10000009

Overview

Basic Information

• Taxon OID: 3300005537
• Scaffold ID: Ga0070730_10000009
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 311778
• Total Scaffold Genes: 270
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 207 (76.67%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000426	Metagenome / Metatranscriptome	1154	Y
F000534	Metagenome / Metatranscriptome	1044	Y
F001318	Metagenome / Metatranscriptome	724	Y
F001511	Metagenome / Metatranscriptome	680	Y
F002898	Metagenome / Metatranscriptome	522	Y
F004902	Metagenome / Metatranscriptome	419	Y
F005617	Metagenome / Metatranscriptome	395	Y
F015125	Metagenome / Metatranscriptome	257	Y
F040900	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070730_1000000917	F005617	AGAAG	MKVQIAAQAVTEPLTCEGETIVVNLHGALISTAVPLRVGMKIEVHVLLTGKRARAEVAYIDPDRPRLCGIGLEKPSNIWGVSLPPEDWIEMDPR*
Ga0070730_10000009259	F002898	GAGG	MADGEKQSRFRLLIEFFKRLLGRKAAPPGDPYAYAMAPIRRGPKGRSGAAVAEIEDDSFRSFPPRHGR*
Ga0070730_10000009262	F001511	GGAG	MFEDVDGMEVFVNPDRVIWIREYPNQTTVISCGHEDKFAVRLAPAHAVAALGKAIR*
Ga0070730_10000009265	F015125	N/A	VTDENTPASHSIKHPHWQREFEAALREDDPQSLRQRVDAAEAALFLRSQALAGMAEGHAERQAISDAMRTLRAIQREKLGYPEVNKG*
Ga0070730_1000000948	F000426	AGGGGG	MKDIHEVLRQKQAKYAQLGKQIEMLQQAAEKLREVAPLLAESDEEDNVVLAEVDDAIGQTDSMAAKAGAGSGSAAAPKGSRPTAPRWP*
Ga0070730_1000000972	F040900	N/A	MPAATILVMFYAGPAADDALKLLLLALIGGGLLVLGRWSSRLGGARSHDAFPDVPTPDVADLLPGSTPKLWPPSAEEVAASLPFDPALGKIRIKKFFFEKTDAIPGPTDRDVFADELHVELYDPDSDHSWWQSYFVATPQGLAKILHDKSWRYLHAPDVLVFSRYDLEEIRRAVVSRIMADHEYFKDKEQEEEEPL*
Ga0070730_1000000976	F001318	GGAGG	MKVLAWMLAVPVLISLAGAQISPSLNRQSPSQEPSSQRSWHAADPGDRMFFPRDMFWGWAQFDLSPPHNEIDPNLCAGNAGQYGGANAPCSMFARYMLSGILEVRPFGRGPLRRFMVYGAPTFLFGKNVPQYLYTWSPDAIGIEHSWGAGIYLNKGFEFRVTQHFLFDRLGARNRSLGVADLGNNGPWGRYMSLGVRKTFGTRRW*
Ga0070730_1000000977	F000534	AGGA	MPQEISVSYQAIKSKVYRLIDALVVGEKSEAEVAESVRRWWSLIHPADRPIAQKYLLMILGRSNSALDAMGAELLSVSGCEIALPLADPSLPSKRMRLVQRLVKESSVRTAV*
Ga0070730_1000000999	F004902	AGG	MKKPTIRVTKWLGDIPVEAGCSACPGVVFRAKGSSHRPNREEFQKSLQAQFDEHCKAVHLQ*