NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070697_100074330

Scaffold Ga0070697_100074330


Overview

Basic Information
Taxon OID3300005536 Open in IMG/M
Scaffold IDGa0070697_100074330 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2792
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004003Metagenome457Y
F004349Metagenome / Metatranscriptome442Y
F006952Metagenome361Y

Sequences

Protein IDFamilyRBSSequence
Ga0070697_1000743303F006952GGAGGVIGPLGSANREIREADRRDEQRRLARLAEPRRLTDHLLGQLEELNLDGIGTVPDGYEPELAELREQLEGLARVRPRLIERLQPGTRTAELIDTVFIIQEIIFPPRLPSGSLPFDDPDLV*
Ga0070697_1000743304F004349AGGAVKTRSWLALPIAALVVAGCGNTPGGPARPPTAQQILAKPDAANVKDGHFTLVAHIVSGGVTFDATGDGIIVVKPQQASRFTMQTSIAGQSLKFEEIIIGGKEYDLSPDNPRWTVKPSTNSSNPSSFKGTDAVYVGEETLPQGKAWHVKAKDDSGNPFEAWVRESDGYPLKYASTMQGSTFTATFDRFNTGQTVSAPPASDIQQ*
Ga0070697_1000743305F004003GGAVIAKLIRIGVALAAVGLLGACGGPGTPLGPPSAKDILAKPLHSNLNDAHFLVSGKFVSPSPGVSVDVHGDGAVVYKNPGAGRFKFETTVAGQKVSYQDISVNGVDYTFVVPGNGKWTAKTTSSGLGRDSFTGASDFAYVGEENLQSGKCWHAKAKDKDGNQFDGWIRESDGYPVKYEITQQGNALTLSFDKYNTGESITAPPASQVVQG*
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Institute for Fundamental Biomedical Research
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